I’m willing to pay good money for honest tales of beauty and despair

Chris Clarke has published a short excerpt from his upcoming Joshua tree book. It’s good. It promises great things to come. It’s also mildly sorrowful, but then, that’s what you’re going to get with good environmental journalism.

There’s also a deal where you can sign up for weekly stories on the desert, in return for a reasonable donation. I signed up for a year’s worth — you might want to consider chipping in, too, if you can afford it.

Shermer rides again!

Jesus. He’s written a climatological ‘Dear Muslima’ for Scientific American, defending Bjorn Lomborg. It feeds directly into a common Republican trope: ‘sure, climate change occurs, and maybe humans contribute to it, but it’s just too costly do what is necessary’. He lists a bunch of problems, and then does a “cost-benefit analysis”.

The ranking is based on a cost-benefit analysis. For example, an investment of $300 million “would prevent the deaths of 300,000 children, if it were used to strengthen the Global Fund’s malaria-financing mechanism.” Another $300 million would deworm 300 million children, and $122 million would lead to total hepatitis B vaccine coverage and thereby prevent another 150,000 annual deaths. Low-cost drugs to treat acute heart disease would cost just $200 million and save 300,000 people.

This doesn’t mean we shouldn’t do more about climate change. But what? Both books posit technological solutions: Lomborg’s Copenhagen experts recommend spending $1 billion for research on planet-cooling geoengineering technologies; Oreskes and Conway have humanity saved by the creation in 2090 of a lichenized fungus that consumes atmospheric carbon dioxide. Whatever we do about climate, we should recognize that the world has many problems. If you are malnourished and diseased, what the climate will be like at the end of the century is not a high priority. Given limited resources, we should not let ourselves be swept away by the apocalyptic fear generated by any one threat.

I fucking hate “cost-benefit analysis” — it’s always accomplished by sweeping a lot of costs under the carpet to reach the desired conclusion. It’s such an easy way to create imaginary books that you can fudge without consequences. Do they factor in the cost of losing New Orleans and Miami? Wanna bet everything is lowballed?

The argument about other problems is bogus, too: if we could wrest government out of the control of goddamned Libertarians and Republicans, we could talk about rational policy making and trying to fund all of those projects. Does anyone really believe progressive politicians are arguing we can’t save those children because we’ve only got money for ONE project, and we can’t prioritize to support humanitarian goals? Does anyone seriously believe for one second that if we follow the Libertarian dream and spend less on carbon reduction (as if we spend enough now), that suddenly the wretched conservatives in congress will decide they can invest a few hundred million dollars to prevent the deaths of foreign children?

NO ONE is claiming that we need to stop everything else and deal only with climate change right now. But they are arguing that we need to carry out an appropriate, necessary, and immediate change in our carbon consumption habits — which we are not doing, thanks to obstructionists and pseudo-scientific rationalizers for the status quo, like Shermer. Pretending that climate scientists want everyone to be “swept away” to deal with “one threat” is simply dishonest. Reprehensibly dishonest. What they’re doing instead is explaining how the long term costs of climate change represent a far greater concern than phony ‘cost-benefit analyses’ allow.

And citing Oreskes and Conway…they wrote The Merchants of Doubt, which is all about how industry assholes have connived to lie to us about the scientific consensus on tobacco, ozone, acid rain, and climate change — Oreskes does not agree with Lomborg. Yet here Shermer lumps Conway and Oreskes into the same camp with Lomborg. And what is this nonsense about ‘lichenized fungus’ in 2090? Nobody can make that absurd claim now, nor give it a date of arrival, let alone a couple of historians of science. What are they going to do, switch to molecular biology and develop it themselves? Why should we trust magic bullet solutions to complex problems?

Simply citing the discredited conservative hack Lomborg is grounds for suspecting Shermer’s ability to judge the quality of the arguments. He might have been well off reading Scientific American’s 12 year old demolition of Lomborg’s credibility. I don’t know what has happened at SciAm that they continue to encourage a Libertarian crank to publish in their once respectable journal…and this after his bogus article on a liberal war on science, and his more recent lying with statistics to dismiss concerns about wealth inequity. Do they simply not care any more?

Quote-mined by Casey Luskin!

Once again, Casey Luskin demonstrates that he’s a biological ignoramus. He is much buoyed by a science report that chloroquinone resistance in the malaria parasite requires two mutations, claims that Michael Behe has been vindicated because that’s exactly what he said, and demands an apology from all of Behe’s critics.

Will Ken Miller, Jerry Coyne, Paul Gross, Nick Matzke, Sean Carroll, Richard Dawkins, and PZ Myers Now Apologize to Michael Behe?

No.

Here’s what his critics actually said. We have no problem with the idea that a particular functional phenotype requires a couple of mutations; I can think of lots of examples of that, such as the work of Joe Thornton on corticosteroid receptors. That the malaria parasite needs two mutations was never a point of contention, nor was it particularly worrisome. What was wrong with Behe’s work is that he naively claimed that the two mutations had to occur simultanously in the same individual organism, so that the probability that could happen was the product of multiplying the two individual probabilities. That’s ridiculous.

As Sean Carroll explained:

Behe’s main argument rests on the assertion that two or more simultaneous mutations are required for increases in biochemical complexity and that such changes are, except in rare circumstances, beyond the limit of evolution. .. Examples of cumulative selection changing multiple sites in evolving proteins include … pyrimethamine resistance in malarial parasites (6) — a notable omission given Behe’s extensive discussion of malarial drug resistance.

To show that the activity required two mutations, as the new paper says, is not an issue; it would have to claim that two simultaneous mutations were required, and that the cumulative accumulation of mutations in the population does not happen. And Behe goes further and declares on the basis of his bogus calculations that no evolution, beyond minor changes in a species or genus, occur at all.

So it’s weird to see Luskin announce that I’ve already conceded Behe’s point. No, I have not.

What we’ll probably get is nothing more than PZ Myers’s concession, offered in the context of the rant quoted above:

Fair enough; if you demand a very specific pair of amino acid changes in specific places in a specific protein, I agree, the odds are going to be very long on theoretical considerations alone, and the empirical evidence supports the claim of improbability for that specific combination.

Well, that’s more or less what’s required to generate chloroquine resistance. We’ll gladly take this — i.e., simply being proven right — in lieu of an apology.

Yet if you actually read the post in question, you’ll see that I’m not conceding that Behe is right — I’m explaining that a low probability is not a barrier to evolution.

Yet his argument for this dramatic conclusion is not only weak, it’s wrong. I could, for instance, correctly argue that the odds of getting a straight flush dealt to you in a 5 card poker hand is about 1 in 6×104; we could calculate this with probability theory, and we could also deal lots of poker hands and determine it empirically. No one’s going to argue with that part of the math.

But now, if I were to define a Straight Flush Complexity Cluster (SFCC) parameter and wave it around and claim that “no hand of the same complexity as a straight flush has been dealt by chance in the last ten years of poker games here in town,” that players can only possibly win one hand in 60,000, or worse, that no one has won a poker hand without cheating and stacking the deck, you’d know I was crazy. But that is basically Behe’s entire argument — he claims to have found the “edge of evolution,” and that it is much sharper and steeper and more impassable than anyone but a creationist could believe.

I’m flattered that Luskin thinks a concession from me would be so significant, but he ought to wait until I’ve actually made one before declaring victory.


Ken Miller wrote to second my comments:

With respect to the malaria mutations, your rebuttal is exactly correct. I’m attaching my review of Behe’s book in Nature. The portion of that review that directly deals with Behe’s contention about two mutations is this:

Behe, incredibly, thinks he has determined
the odds of a mutation “of the same complexity”
occurring in the human line. He hasn’t. What
he has actually done is to determine the odds of
these two exact mutations occurring simultaneously
at precisely the same position in exactly
the same gene in a single individual. He then
leads his unsuspecting readers to believe that
this spurious calculation is a hard and fast statistical
barrier to the accumulation of enough
variation to drive darwinian evolution.
It would be difficult to imagine a more
breathtaking abuse of statistical genetics.

Then, later on, I wrote:

“Behe obtains his probabilities by considering
each mutation as an independent event, ruling
out any role for cumulative selection, and
requiring evolution to achieve an exact, predetermined
result. Not only are each of these
conditions unrealistic, but they do not apply
even in the case of his chosen example. First,
he overlooks the existence of chloroquine resistant
strains of malaria lacking one of the
mutations he claims to be essential (at position
220). This matters, because it shows that there
are several mutational routes to effective drug
resistance. Second, and more importantly, Behe
waves away evidence suggesting that chloroquine
resistance may be the result of sequential,
not simultaneous, mutations (Science 298,
74–75; 2002), boosted by the so-called ARMD
(accelerated resistance to multiple drugs)
phenotype, which is itself drug induced.”

I hope these quotes are useful to you and your readers. As usual, Luskin is playing the “pretend” game of taking a new scientific paper and telling folks that it presents a “problem” for evolution. Ain’t life grand?

Best Wishes,

Ken

Mary’s Monday Metazoan: Respect for the nematomorph

There’s a new vampire series on FX by Guillermo Del Toro, The Strain. I haven’t seen it — I don’t get that channel — but I’ve read the book, which I found interesting for making vampires utterly disgusting, and also for stealing biological analogues for the infection (alas, I thought the story started very well but got tedious by the end). Apparently, the model for the vampire parasite was the horsehair worm, or nematomorpha. These are best known as parasites of orthopterans.

HHW_movie

I do have to object to one statement in that story: “Really, for my money, worms are among the worst animal groups out there.” Worms are not a proper taxon. The Nematomorpha are a completely different phylum from the worms most people are familiar with, from nematodes, from polychaetes, from flatworms, etc. Worms are phyletically diverse! Not all of them turn you into a vampire.

I’ve got to buy a Roku now?

They seem to be nifty little devices, and now I have one more reason to get one.

American Atheists announced Wednesday that it has set Tuesday, July 29, 2014, as the official date for the launch of Atheist TV, the world’s first television channel dedicated to atheist content, on Roku. The national atheist nonprofit will host a launch party that night in Manhattan to celebrate.

“The launch of Atheist TV is history in the making,” said American Atheists President David Silverman. “There are hundreds of TV channels dedicated to religious programming, but nothing like this has ever existed before for atheists, and yet the demand is overwhelming. For the first time, atheist video content—from firebrand speeches, to stand-up comedy, to documentaries, to real science-based educational programming, and more—is now available to atheists worldwide, on the air and all in one place. Atheist TV brings consistent, quality, superstition-free programming for children and adults, on the air and on-demand, right from your regular television. This is an idea whose time has come and we’re celebrating.”

The invitation-only launch party will take place from 6-8 pm ET at the Union Square Penthouse venue in Manhattan. Well-known TV producers and personalities, atheist activists and public speakers, video content producers for the channel, and Atheist TV and American Atheists sponsors and donors will be in attendance. The celebration and launch will feature a speech by President David Silverman and a countdown to the first broadcast at 7 pm, at which time a welcome video starring several well-known atheists and science educators will air.

The channel, which provides both an on-air streaming schedule and video-on-demand, is available worldwide for free via Roku, a small device that connects to the back of a television, similar to a cable box. The on-air live streaming portion will also be viewable free on the channel’s website. See http://www.atheists.tv for more information.

Maybe humanity deserves extinction, after all

Behold, the latest example of human stupidity and shortsightedness.

In small towns across America, manly men are customizing their jacked-up diesel trucks to intentionally emit giant plumes of toxic smoke every time they rev their engines. They call it “rollin’ coal,” and it’s something they do for fun.

An entire subculture has emerged on the Internet surrounding this soot-spewing pastime—where self-declared rednecks gather on Facebook pages (16,000 collective followers) Tumblers and Instagram (156,714 posts) to share photos and videos of their Dodge Rams and GM Silverados purposefully poisoning the sky. As one of their memes reads: “Roll, roll, rollin’ coal, let the hybrid see. A big black cloud. Exhaust that’s loud. Watch the city boy flee.”

These dumbasses think they’re being tough and rebellious, when they’re simply parroting conservative stupidity.

Aside from being macho, the rollin’ coal culture is also a renegade one. Kids make a point of blowing smoke back at pedestrians, in addition to cop cars and rice burners (Japanese-made sedans), which can make it dangerously difficult to see out of the windshield. Diesel soot can also be a great road rage weapon should some wimpy looking Honda Civic ever piss you off. “If someone makes you mad, you can just roll coal, and it makes you feel better sometimes,” says Ryan, a high school senior who works at the diesel garage with Robbie. “The other day I did it to this kid who was driving a Mustang with his windows down, and it was awesome.”

The ultimate highway enemy, however, are “nature nuffies,” or people who drive hybrid cars, because apparently, pro-earth sentiment is an offense to the diesel-trucking lifestyle. “The feeling around here is that everyone who drives a small car is a liberal,” says Ryan. “I rolled coal on a Prius once just because they were tailing me.”

I despair of humanity sometimes. If we make it that far, future generations will look back aghast at these idiots. I know there is something at least that keeps me going.

According to the Clean Air Taskforce, diesel exhaust is one of the country’s greatest sources of toxic pollutants and leads to 21,000 premature deaths each year, but even that won’t deter the coal rollers. “I’m not a scientist, but it couldn’t be too horrible,” Robbie says. “There are a lot of factories that are doing way worse than my truck.”

I’m not ready to die off yet, because I want to see these motherfuckers die first.