Exposing the intimate details of the sex lives of placoderms

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The media is getting another science story wrong. I keep seeing this discovery of an array of fossil placoderms as revealing the origins of sex, and that’s not right. Sex is much, much older, and arose in single-celled organisms. Come on, plants reproduce sexually. A fish is so far removed from the time of origin of sexual reproduction that it can’t tell us much about its origins.

Let’s get it right. These fossils tells us about the origin of fu…uh, errm, mating in vertebrates.

What we have are a set of placoderm fossils from the Devonian (380 million years ago) of Western Australia (The Aussies are going to be insufferable, now that they can claim to be living in the birthplace of shagging) that show two interesting features: some contain small bits of placoderm armor that show no signs of digestion, and so are not likely to be relics of ancient cannibal feasts, but are the remains of viviparous broods — they were preggers. The other suggestive observation is that the pelvic girdle has structures resembling the claspers of modern sharks, an intromittent organ or penis used for internal fertilization.

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Weird-eyed fish

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This is a photograph of Macropinna microstoma, also called barreleyes. It has a very peculiar optical arrangement. When you first look at this photo, you may think the two small ovals above and behind its mouth are the eyes, and that it looks rather sad…wrong. Those are its nostrils. The eyes are actually the two strange fluorescent green objects that look like they are imbedded in its transparent, dome-like head.

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(Click for larger image)

Video frame-grab of Macropinna microstoma at a depth of 744 m, showing the intact, transparent shield that covers the top of the head. The green spheres are the eye lenses, each sitting atop a silvery tube. Visible on the right eye, just below the lens on the forward part of the tube, is the external expression of a retinal diverticulum. The pigmented patches above and behind the mouth are olfactory capsules. High-definition video frame grabs of Macropinna microstoma in situ are posted on the web at: http://www.mbari.org/midwater/macropinna.

It gets the name “barreleyes” because it’s are cylindrical, rather than spherical; this is an adaptation for better light collection in the dim depths where it lives, using very large lenses but not building a giant spherical eye to compensate. It’s ore like a telescope than a wide-angle camera. Here’s what a single eye in a side view looks like — the lens (L) is what is glowing so greenly in the photos.

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Chapman’s (1942) mesial view of the left eye of Macropinna microstoma. Abbreviations: RS = rectus superior, L =lens, OS = obliquus superior, OI = obliquus inferior, RIN = rectus internus, RI = rectus inferior, RE = rectus externus, OP = optic nerve.

As if that weren’t weird enough, the animal has a completely transparent skull cap, and the eyes swivel about within the skull to look out through that translucent cranium. In the two pictures below, the animal is first looking straight up through its head (the eyes are in the same orientation as in the diagram above), and in the right frame it has rotated the binocular-shaped eyes forward to look ahead.

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Lateral views of the head of a living specimen of Macropinna microstoma, in a shipboard laboratory aquarium: (A) with the tubular eyes directed dorsally; (B) with the eyes directed rostrally. The apparent differences in lip pigmentation between (A) and (B) are because they were photographed at slightly different angles. (A) was shot from a more dorsal perspective and it shows the lenses of both eyes; the mouth is not sharply in focus. (B) shows only the right eye, with the lips in sharper focus.

Nature is always coming up with something stranger than we would imagine, and Macropinna is a perfect example. Apparently, the function of this arrangement is to give the animal a sensitive light detector for tracking its prey, bioluminescent jellyfish, and at the same time to shield the eyes from the stinging tentacles of the jelly while it’s eating it.


Robison BH, Reisenbichler KR (2008) Macropinna microstoma and the Paradox of Its Tubular Eyes. Copeia 2008(4):780-784.

Neandertal genome? Or a premature announcement?

In a potentially exciting development, researchers have announced the completion of a rough draft of the Neandertal genome in a talk at the AAAS, and in a press conference, and the latest issue of Science has a number of news articles on the subject. And that is a reason for having some reservations. There is no paper yet, and science by press release raises my hackles, and has done so ever since the cold fusion debacle. Not that I think this is a hoax or error by any means, but it’s not a good way to present a scientific observation.

Also, the work has some major limitations right now. They’ve got about 60% of the genome so far, and it’s all entirely from one specimen. From the age of these bones, degradation is inevitable, so there are almost certainly corrupted sequences in there — more coverage would give me much more confidence.

With those caveats, though, there are some tantalizing hints, and the subject is so exciting that it’s understandable why there’d be rush to announce. So far, they’ve identified approximately 1000-2000 amino acid differences in the coding part of the genome (human-chimp differences are about 50,000 amino acids), but there’s no report of any detectable regulatory differences.

I’m withholding judgement until I see a real paper; for now, you have to settle for a podcast with a science journalist, which just isn’t meaty enough yet.