Science journalists accept logical fallacy, therefore journalism is compatible with stupidity

I said I was done with this guy, but his latest includes a bit that annoys me to no end. Keith Kloor interviews Daniel Sarewitz to get ammo for his claim that religion and science are compatible.

Based on your piece, I would presume that you think the two are compatible. However, some of the prominent New Atheists, such as PZ Myers and Jerry Coyne, insist that science and religion are incompatible. Why has this discussion become so binary? Why the either/or mindset exhibited by some atheists?

DS: There are lots of scientists who are also religious, so as an empirical matter science and religion are apparently not incompatible.

Gah. Dumb.

There are scientists who believe the earth is 6000 years old and that there was a global flood 4000 years ago. Therefore, science and creationism are perfectly compatible.

There are accountants who skim off profits and hide them in the books, therefore accounting is compatible with criminal larceny.

There are doctors who smoke, therefore smoking is compatible with healthy lungs.

Why has this discussion become so binary? Easy. Because some scientists have gigantic religious blindspots and want to pretend that their gullibility is part of their science.

MOOCs in perspective

I like the idea of MOOCs — massive open online courses — as ways to help spread the information at universities to a wider public. I don’t like the idea that these can replace real universities, though. It buys into the assumption that what universities deliver is big brains talking at a passive audience, when that’s only a small part of the experience. Scicurious is unimpressed, too.

Look, you want to learn? These online courses are a good supplement, and give you an opportunity to hear from experienced instructors. But if you really want to dig deep, there’s the disciplined grind as you try to master the minutia of a subject, there’s the hands-on lab experience, there’s give-and-take with peers and professors that you really need to bring it home. MOOCs just don’t do that.

Problem-solving 101

I have a question for you all. I was reading this article about our terribly violent cultural surroundings, which includes both the Bible and American movies.

Whether history or mythology or some fusion of the two, the Bible stories, when tallied, include an estimated 25 million violent deaths. And yet, like any people, the internal narrative of God’s Chosen Ones is one of yearning for peace and prosperity, the dream of an idyllic past in which the lion lay down with the lamb; an idyllic future in which men will beat their swords into plowshares and the lamb and lion will lie down together again.

The Bible is a collection of stories about nasty genocidal people, with a message of peace that they pay lip service to while slaughtering their foes. American movies are all about brave heroes killing people to protect the good and kind.

So, the question: have you ever in your entire life settled a personal problem with violence? Have you resolved any conflicts by taking out your opposition, just destroying them to remove the obstacle to your life or happiness?

If you did use violence to fix a personal problem, did it work?

Just curious. I can think of only one time that I tried it; I hauled off and punched a grade-school bully in the face. It didn’t change anything, but it did make it worse, because a teacher (one who was a bullying jerk himself) decided to discipline me with a little corporal punishment — an hour of deep knee bends that left me barely able to walk afterwards.

Ever since, though, I’ve experienced nothing where I was tempted to resort to violent action, and nothing where I could believe that violence would help. There’s no situation that can’t be made worse by adding a gun, no opponent who will respond to a normal civic conflict by being cowed by the guy with a baseball bat.

Second question: so why is our media so saturated with bloody-minded simple solutions to problems? Arnold Schwarzenegger blowing up buildings with two-fisted cannons, Liam Neeson smashing heads and knifing evil-doers, superheroes solving every difficulty by applying force…it’s ludicrous that anyone imagines that these are effective answers to anything.

Fishing for meaning in a dictionary of genes

I’ve constricted my anus 100 times, and it isn’t helping! I’m still feeling extremely cranky about this story from the NY Times.

Scientists intend to sequence Adam Lanza’s DNA. They’re looking for genetic markers for mass murder. Why? Because some scientists are stupid.

Some researchers, like Dr. Arthur Beaudet, a professor at the Baylor College of Medicine and the chairman of its department of molecular and human genetics, applaud the effort. He believes that the acts committed by men like Mr. Lanza and the gunmen in other rampages in recent years — at Columbine High School and in Aurora, Colo., in Norway, in Tucson and at Virginia Tech — are so far off the charts of normal behavior that there must be genetic changes driving them.

“We can’t afford not to do this research,” Dr. Beaudet said.

There must be genetic changes underlying this specific behavior? There is no reason at all to assume that. Furthermore, this isn’t “off the charts of normal behavior” — there have been 62 mass murder events in the US in the last 30 years. There are witch-burnings going on in Africa right now. European Americans casually exterminated the native population of the Americas, and now pens the remnant population in reservations where they are kept in poverty. We had entire nations worth of people involved in the mass murder of 6 million Jews in the last century. Hey, shall we round up a bunch of Germans and take DNA swabs so we can figure out what there is that’s unique to their genes that allows them to commit genocide? (I better be clear here: I’m being sarcastic. I really don’t think Germans have a biological predilection for racism or murder, any more than any other people.)

I would ask whether there is any reason to assume that this behavior is a heritable trait. Is there a familial history of mass murder? Are we really going to assume that the diverse individuals who have committed these horrific crimes are all related, or all carry some common marker that isn’t found in people who don’t commit murder?

I can predict exactly what will be found when they look at Adam Lanza’s DNA. It will be human. There will be tens of thousands of little nucleotide variations from reference standards scattered throughout the genome, because all of us carry these kinds of differences. The scientists will have no idea what 99% of the differences do. They will make dubious associations — for example, they might find a novel nucleotide in a gene that has other variants correlated with schizophrenia — and in the absence of any causal link at all, they’ll publish garbage papers that try to impute a signal to common genetic noise. Some idiot will make noise about screening for an obscure mutation that Lanza carried, just because it’s something different.

I wonder if there are neurologists poking around in his brain, looking for differences, too. It’s the same issue; we don’t understand the majority of the functional consequences of individual variations in connectivity in the brain, and we have a population with large amounts of random variation. So how are you going to recognize what’s special and unique and causal about Lanza’s brain (or Einstein’s brain, or my brain, or yours)?

Fortunately, there are some sensible people out there.

“It is almost inconceivable that there is a common genetic factor” to be found in mass murders, said Dr. Robert C. Green, a geneticist and neurologist at Harvard Medical School. “I think it says more about us that we wish there was something like this. We wish there was an explanation.”

I suspect the explanation is going to be more a consequence of individual experience, although of course biology is going to shape how we respond to circumstance. But to go rifling about in a genome we don’t understand to find a simple cause is ridiculous and futile. Sure, freeze some cells down and store them away; maybe some day we’ll understand more and there will be a legitimate and specific hypothesis that can be tested by examining killers’ genetics…but a fishing expedition is pointless and dumb, and at this state of our understanding, only opens the door to misconceptions and ethics abuses.

An insider’s perspective on Dover

Via Ron Sullivan, who posted a link on the Great Blue Evil, an amusing story about a visit to Big Bend National Park in which the ranger in residence turns out not to be from around there:

Bob Hamilton 65, is a retired biology teacher and high school principal from Carlisle, Pa. He works six months a year in Big Bend and five more in Yellowstone.
I ask him where he was principal. He says York. I ask what school. He says Dover.
My eyes must’ve been wide as dinner plates. My insides roiled with barely contained glee.
My unexpressed response: No shit!
What I say: “The infamous Dover High School?”

That’s this Dover, the school district in Pennsylvania where creationists pressured the local Board of Education to introduce “Intelligent Design” into the high school biology curriculum in January 2005. Parents sued the Board, which subsequently got its collective ass handed to it in court. The judge’s 139-page opinion on the case called the change in curriculum “breathtakingly inane,” for instance.

Apparently, the inanity was taking people’s breaths for a few years before 2005:

Hamilton, who retired as principal of Dover High School in 2002, stood on the ground floor of Dover’s Intelligent Design era. He saw the storm brewing.
“Don’t quote me on this, but I knew that board was going to get us in trouble,” he said.
There was no doubt I was going to quote him on this. I think he realized this. I hope so, anyway.
“There are great kids in the community,” he says. “The kids in the community in no way reflect the ideas coming out of that school board. None of those people had any connection to the kids.”
According to Hamilton, then-school board president Donald “Daddy” Bonsell used to haunt his office and harangue him on behalf of the burgeoning wingnut conspiracy. Bonsell badgered Hamilton to do his part to get Intelligent Design into the Dover curriculum.
“He came in one day, and finally I told him, ‘OK, I’ll put Intelligent Design into the curriculum … if you start a petition and get all the local ministers in the community to sign it saying they’ll allow the teaching of evolution in Sunday school,’” Hamilton says.

I like the fact that this guy “retired” by continuing to teach kids about science on the National Park Service’s dime. Good for him.

And a complementary view from Ars Technica

When I agreed that many so-called ‘controversies’ don’t warrant a debate, I wasn’t saying that we shouldn’t cover them…just that they should be addressed appropriately, as fringe issues. The last thing we would want is media silence on, for instance, creationism! Ars Technica has a good piece on why we mustn’t be quiet about weird political positions.

Through the years I have received countless e-mails and have read hundreds of article comments imploring Ars to keep "political" stuff off the site. Such entreaties most commonly occur in relation to our scientific coverage of climate change or evolution, but also when we cover biological and anthropological matters of gender and sex. (They also come to a lesser extent when we cover the inherently political world of intellectual property, where, coincidentally, there are far fewer facts—but that’s outside the scope of this editorial.)

What those petitioners do not realize is that in asking us to be silent, they require that we take a politicized stance. Intentional silence is support for the status quo, and as such, it’s inherently political. Note that I’m speaking of intentional silence or avoidance, purposely not covering a topic so as not to bring light to it. Inasmuch as our editorial mission is, in part, to cover the issues relating to science and technology that are most challenging to our culture, it is unthinkable for us not to cover these issues. To reiterate, not covering them would be just as "political" as covering them.

This is also why I ignore or mock people who complain that “The movement has been co-opted by people with an agenda”everyone has an agenda. Demanding silence on topics you don’t like is a symptom of having an agenda.

It needs to be said

David Hone has a good piece on what constitutes an appropriate subject for debate, and how the media fails.

The truth however, is near inevitably that there is only a very small minority making a disproportionate noise about their case. There is no debate over evolution, or the dinosaurian origin of birds, or that HIV leads to AIDS, or that climate is changing, or a great many others. That there are real, accredited scientists who do not think this is the case is not in doubt (sadly). But that this represents a real schism in the scientific community, that large numbers of researchers take these positions and that it occupies a significant amount of scientific research, or that there is good evidence for that position is certainly incorrect. One or two people arguing a point (and often doing so primarily in the media) does not make a debate.

This for me seems like the opposite of what good journalism should be. Surely the point is to provide a representation of the true state of affairs rather than spin (even if unintentionally) the fact that there is disagreement as something that is effectively 50:50, when it’s 99.9:00.1 or less. This can be humorous from an insider’s position when one sees the media triumph a paper as ‘reigniting the debate over x’ when in truth the researchers have looked at the paper, noted an obvious flaw or that it simply rehashes old and incorrect arguments or data, and carried on. The flipside of this is where there really is a scientific debate, in which case the debate is not reignited at all, but merely still going on, it has merely come to the attention of the press and public again which is not the same thing at all.

At least I have noticed over the years a decreasing tendency for newspapers to try to couple every discovery about evolution with a quote from some creationist somewhere, so I think the situation is slowly improving.