Please avoid the term “paradigm shift” unless you’ve got something really surprising

Am I missing something here? Here’s an article with the grand title of “Researchers propose expanded evolutionary concept”, which declares that we’re going to have to expand and rethink our understanding of evolutionary theory. “Oh really?” I thought, but I read it with an open mind, expecting some dramatic new phenomenon to be explained. I was a little disappointed to find it was about ramets.

Don’t get me wrong, ramets are interesting, and the paper’s content is fine, if maybe a little overhyped. Ramets are an asexual kind of reproduction, fairly common in plants, where runners sprout shoots that develop into individuals — a familiar example is aspen trees, where a clump of trees, even a whole forest, may consist of clones of a single source individual, each tree born of the original source root system, spawning more roots that generate more ramets that expand the clone.

The paper makes the good point that these organisms aren’t constrained by Weisman’s barrier, which postulates that there is no exchange of heritable variation from the soma to the gonads, which we animals take for granted. If your fingers were irradiated, producing a new collection of mutations in those tissues, it won’t matter to future offspring because those cells don’t contribute to sperm and egg. That would all change if you were able to sprout clonal copies of yourself from your fingertips, like these ramets, because then those irradiated digits would have a way to reproduce independent individuals. It would also be hard to type with all these finger-fetuses growing from my hands.

So in organisms with the ability to propagate from somatic tissues, somatic mutations are a mechanism for generating new variations. That’s the story here.

Evolutionary consequences of somatic mutations when they enter the germline.
(A) In most animals, the Weisman barrier between soma and germline prevents transfer. However, germline determination occurs late in plants, fungi, and some basal metazoans. In the hydrozoa, for example, stem cells differentiate into germ cells throughout the life of the colony. In others, trans-differentiation of soma into germ cells may occur. Thus, as somatic mutations accumulate, some may enter the germ line. Once in the germline, somatic mutations are recombined into different genetic backgrounds during meiosis similar to germline mutations. This reduces linkage between potentially deleterious mutations, which otherwise would lead to increasing genetic load. (B) Multilevel selection may also speed up adaptive evolution by providing a first filter of negative selection at the level of cell populations. However, the success of adaptive somatic genetic variation (SoGV) depends on whether they occur in stem cells and the specifics of how new modules arise. Homogeneous modules each arising from single mutated stem cells may compete with each other at the within-genet level and be subject to selection.

Yes, fine, this is an important phenomenon, but is it really new? Does it require bold new changes to evolutionary theory? In my head, I’m quite aware that asexual species can still evolve and acquire new traits, and that is perfectly compatible with the evolutionary principles I understand. There is often an erroneous bias in humans to assume that all populations reproduce sexually, like us, and that somatic tissues can’t propagate from cuttings, like us animals, but evolutionary theory isn’t blinkered in that way. Why is phys.org announcing we need an “expanded evolutionary concept” to account for this? We don’t. This could just be phys.org over-hyping something, as they tend to do.

But no, it’s actually in the paper itself. Oh no, it’s the dreaded paradigm shift.

Evolutionary biology has made tremendous progress in explaining the emergence and maintenance of sexual reproduction despite the two-fold costs of sex. Here, we addressed the flip side of the coin, namely, how do a large number of species cope with extended phases of asexual reproduction that, according to conventional wisdom, precludes the emergence of genetic and phenotypic diversity and hence, adaptive evolution? With empirical data increasingly confirming earlier conceptual work, it is now timely to suggest a paradigm shift that acknowledges the evolution of modular species at multiple levels. Cell lineages evolve within ramets, which in turn are forming asexual populations featuring a mix of mosaic and fixed SoGV. Both of these levels of variation and selection are, in turn, nested within sexually reproducing populations of genets that are corresponding to the ‘classical’ level of individuality in population genetics of unitary species, leading to potentially complex pathways of adaptation that merit further study.

Great, yes, I agree, multiple levels of selection, somatic mutation can contribute to genetic diversity, there’s nothing wrong or surprising about that. But where’s the “paradigm shift”? What’s the part that can’t be accommodated by our current understanding of genes and phenotypes and populations? Come on, people, tone down the exaggeration.

Unless there’s something I am missing here, which does happen. I may be a bit of an animal-chauvinist, so it feels awkward to have to remind a plant-person that evolutionary theory can handle bacteria quite well, so the peculiarities of our multicellular models aren’t necessarily going to require radical renovation of the whole idea.

Rod Dreher still has a job

I know, it’s hard to believe but he does. He’s got a strange little niche as the “crunchy con”, a granola-eating Catholic conservative, and seems to get writing gigs all over the place. Given recent and ongoing historical revelations, just the word “Catholic” gives me heebie-jeebies, but I guess I’m alone in that, given that some people think “Jesuitical” is a compliment and that the Supreme Court seems to have been packed with practitioners of that bizarre faith.

But anyway, back to Rod Dreher. I actively avoid reading anything by the guy, which means that I only see the most outrageous excerpts that have already spread far and wide, so I admit to some sampling bias here. But how in the name of all that is holy and unholy did the opening paragraph of a recent essay pass by an editor?

I have never given circumcision a single thought, other than to consent to my sons’ circumcision. Europeans think its weird for American Gentiles to be circumcised, and I think they’re right … but I remember the one kid we had in my elementary school class, a black boy who had been born at home, and who was not circumcised. All us boys wanted to stare at his primitive root wiener when we were at the urinal during recess, because it was monstrous. Nobody told us that wieners could look like that. The kid didn’t know why his penis was so strange looking, and neither did we. Third grade, man.

That is amazing. The first sentence is the car driving through the fence railing and over the cliff, the second sentence is the bone-crushing crunch as it hits a boulder on the way down, and the third is when the vehicle bursts into flame and explodes. It’s like a 70s detective show.

The overall message of the essay is one I agree with, that routine circumcision is a bad practice, but how he gets there is weirdly traumatic.

The first bit is expected and routine — of course Rod Dreher never gave it a moment’s thought when he agreed to let doctors do unnecessary surgery on his children’s penises. He put far more thought into the arguments of anti-vaxxers when he decided to ignore his doctors and space out his children’s vaccination schedule, but hacking off bits of a baby’s flesh? Sure, everyone else is doing it, let’s go along.

But then, the presentiment of doom comes along when he introduces the subject of his reminiscence…a black boy. His skin color is totally irrelevant to his point, but it does prime the explosives nicely for that moment when he sets off primitive root wiener, which was monstrous. Yikes. Hey, editor at the American Conservative: you’ve got an essay about the perils of circumcision, and you could have honed it easily by snipping out “black” and removing the whole racist diversion into the black child’s monstrous, primitive penis but did you? No, you did not. You may not have even noticed.

Dreher was a late convert to Catholicism (he has since left the church, after Pope Benedict retired, because he was concerned at how it has lost “rigor” since Vatican II in 1959 — he’s a very strange man) so his religious upbringing doesn’t quite explain his bizarre childhood behavior. All the boys in his elementary school would gather around the urinal to stare at a penis? I don’t believe it. I don’t recall ever seeing any other child’s penis in elementary school, let alone retaining it as a vivid memory later in life. In my schooling, the children wore pants, and using the urinal wasn’t an invitation to a communal gawping session. But then, maybe schools were different in Lousiana, where he grew up. Y’all wear pants down South, right?

I don’t think you can blame it on “Third grade, man.” In my third grade experience, I was obsessed with dinosaurs, not black boys’ penises.

I see a pattern here

In the US and Canada, we’ve had a tremendous number of cases of sexual abuse by Catholic priests — over and over, with the church hierarchy concealing and actively shuffling criminal priests about. But maybe it’s just us Americans? Or Canadians? So let’s see what’s going on in other countries. It’s another horror.

A major report released Tuesday said French Catholic clerics had abused more than 200,000 minors over the past 70 years, a systemic trauma that the inquiry’s leader described as deep and “cruel.”

The report’s findings could trigger a public reckoning in a country where church officials long stalled efforts to investigate complicity. The findings also add to the picture of country-by-country trauma within a religion that has tended to find abuse on a stunning scale anywhere it has looked.

I know, you find it hard to believe, but the common link seems to be … the Catholic priesthood! Who could have guessed that?

I think the appropriate response would be to disband the church, for governments in every country to seize their assets, and for everyone to look on Catholic priests as we would Nazis or the KKK.

That last is only a minor punishment in the USA.

I think, though, we know what to expect from the Vatican: empty pieties and disingenuous regret. But Jesus, 200,000 abused children, how are they going to gloss over that?

The Nobel acknowledges global warming, again

This year’s physics Nobel goes to Syukuro Manabe, Klaus Hasselmann, and Giorgio Parisi for “for the physical modelling of Earth’s climate, quantifying variability and reliably predicting global warmings” and “for the discovery of the interplay of disorder and fluctuations in physical systems from atomic to planetary scales” and for giving us something more to talk about in our Saturday podcast.

And yet, there are still people — Republicans, mainly, who I will grudgingly admit are still “people” — who deny the science.

Let’s be fair, though. There are also a lot of Democrats who are dragging their heels and refusing to do anything but the bare minimum they can get away with.

A tight ball of rage

Day 2 of the Hungering

Checked on the fly nursery today. No adults yet.

“They’re pupating,” I told the spider children, “Any day now.”

“We hunger,” hissed the spiderling between the veil of its legs, one glittering eye glaring out at me. “We will be fed. Any taut sac of fluid-filled flesh will do as well as another.”

I bowed and retreated. More flies for the horde will spawn soon. I hope.

[Read more…]

How does this deadly nonsense continue?

Have you no decency, Joe Rogan? Here we go again, with the popular podcaster peddling another conspiracy theory.

Joe Rogan’s streak of terrible COVID-19 takes continued this week when he baselessly suggested the White House faked President Joe Biden’s booster shot on live TV out of fear that he could have dropped dead in the moment.

After Biden took questions from reporters while he received his third dose of the Pfizer jab earlier this week, Rogan used his massively popular Spotify podcast to wonder aloud if it was a “real booster.”

When his guest, former CIA officer Mike Baker agreed, suggesting that it was merely “performance art,” Rogan dug deeper into his latest conspiracy theory.

“I don’t think they would take the chance,” the host said. “I think if they were going to give him a booster shot, the last thing they would do is give it to him live on television. What if he dies? What if he blacks out? What if he gets it and faints? Because people have had very bad reactions, like in the moment, for whatever reason.”

Such nonsense. This is a common trope, pretending that the vaccine is actively harmful. It’s not. Claiming that is leads to horrific situations like this, in which an evil quack goes into a hospital and lies to an elderly man suffering with COVID-19.

Watch as 67-year old Joe McCarron, hospitalized with Covid-19 in Ireland, is urged by a fanatical anti-vaxxer and covid-denier to check himself out of the hospital while a doctor calmly, kindly, and patiently explains why that would not be a good idea for someone in his condition and urges him to stay, saying that he was very ill and could die if he went home. But the person with McCarron badgered him to leave and he finally acquiesced. Two days later, he was back in the hospital with breathing problems and subsequently died.

The quack, Antonio Mureddu Gravegliu, literally told the man that the hospital was going to kill him. The Garda are “investigating”, I don’t know what — they’ve got the guy recorded lying to the patient and urging him to leave the hospital’s care.

Rogan is part of the chain of chaos and death. Why isn’t he being investigated?

I’m telling you, Hovind is a total wackaloon

In case you didn’t realize this already, he’s got all the kook symptoms. Kent Hovind is a young earth creationist, and now, quite clearly, a vaccine denier. This is a short excerpt from a much longer conversation with another creationist, in which he apparently felt comfortable letting his hair down. Watch it while you can, it wouldn’t surprise me if it gets taken down.

To summarize, he thinks the Tribulation (which isn’t in the Bible) is about to start this year, or has already started. He thinks the Rapture (also not in the Bible) will occur in 2028. He believes that there are microchips (mark of the beast!) in the vaccines, and that the government will be tracking you by shining UV or blue lights on you.

I guess I’ll have to cite Deuteronomy 13:1-5.

1 If there arise among you a prophet, or a dreamer of dreams, and giveth thee a sign or a wonder,
2 And the sign or the wonder come to pass, whereof he spake unto thee, saying, Let us go after other gods, which thou hast not known, and let us serve them;
3 Thou shalt not hearken unto the words of that prophet, or that dreamer of dreams: for the Lord your God proveth you, to know whether ye love the Lord your God with all your heart and with all your soul.
5 And that prophet, or that dreamer of dreams, shall be put to death; because he hath spoken to turn you away from the Lord your God…

Also Matthew 24:36.

But of that day and hour no one knows, not even the angels of heaven, but My Father only.

Those actually are in the Bible.

Molecular neurogenetics gets the nod from the Nobel committee

The Nobel in medicine this year goes to David Julius and Ardem Patapoutian for their work in identifying the receptors that transduce heat and touch into signals in the nervous system.

So now you know the proximal sensors that are activated when you hug someone, or when you nibble on some ghost pepper. It’s TRPV and PIEZO channels!

Now they just have to figure out what’s going on in the central nervous system when those channels are triggered.