Jerry Coyne has a blog

I know! It’s hard to believe! Why, any of the riff-raff can just charge in and start a blog anymore. You write a book or a few, do some internationally recognized research in evolution, and suddenly you get cocky and think you have the talent to write a blog. Back in the day when I started in this, I had to struggle with none of that. And I liked it!

Despite his awesome handicaps, it is a pretty good blog.

I especially like this image from his book, Why Evolution is True(amzn/b&n/abe/pwll):

So…no transitional forms, huh? Look at that australopithecine between modern Homo and Pan. It’s definitely not a chimp — the pelvis alone would tell you that — yet it’s also definitely far from fully human. Very cool.

Maiacetus

My teaching schedule this semester is a major time-suck; I’m teaching genetics and all of its associated labs (you really don’t want to know how much prep time goes into setting up fly labs), I’m doing some major revision of the content this year, and I’ve got this asymmetric schedule that packs everything into the first half of each week. So I simply have to protest when those evil (Stein was right!) scientists announce a major discovery on a Tuesday, which just happens to be the very worst day of the week for me. They’ve gone and found another important whale transitional fossil, Maiacetus, and I’m just going to have to tell you to go read a bunch of other fine blogs that already have it covered.

i-bd63fdc1acedcd8fb4bd46a00b992235-maiacetus.jpeg
(Click for larger image)

Skeletons of the Eocene archaeocete whales Dorudon atrox and Maiacetus inuus in swimming pose.

(A, B)- Dorudon atrox (5.0 m; 36.5 Ma) based on UM 101222 and 101215 [11] in lateral and dorsal views, respectively. (C, D)- Maiacetus inuus (2.6 m; 47.5 Ma) based on male specimen GSP-UM 3551 in lateral and dorsal views, respectively.

It’s beautiful. It’s clearly adapted for aquatic life, but it has another revealing feature: this specimen was pregnant at death, and the fetus is oriented for a head-first birth, which is not good for birth at sea (the head would pop out, baby would take its first breath, and drown before the tail emerged), so this animal would have had to give birth on land.

But like I said, you’ll have to read Carl Zimmer, Ed Yong, Brian Switek, or Greg Laden this time around for all the details. Or read the paper yourself! It’s freely accessible.

Darwin 200

A few of us wild and crazy evo people, including Richard Dawkins, wrote up pieces for an issue of the BBC Focus magazine. You’ll find me arguing with Steve Jones about whether evolution has stopped, Richard Lenski is highlighted, and Carl Zimmer makes an appearance. If you’ve got a flash player, you can read it online right now. It’s pretty good stuff, if I do say so myself.

Durston’s devious distortions

A few people (actually, a lot of people) have written to me asking me to address Kirk Durston’s probability argument that supposedly makes evolution impossible. I’d love to. I actually prepared extensively to deal with it, since it’s the argument he almost always trots out to debate for intelligent design, but — and this is a key point — Durston didn’t discuss this stuff at all! He brought out a few of the slides very late in the debate when there was no time for me to refute them, but otherwise, he was relying entirely on vague arguments about a first cause, accusations of corruption against atheists, and very silly biblical nonsense about Jesus. So this really isn’t about revisiting the debate at all — this is the stuff Durston sensibly avoided bringing up in a confrontation with somebody who’d be able to see through his smokescreen.

If you want to see Durston’s argument, it’s on YouTube. I notice the clowns on Uncommon Descent are crowing that this is a triumphant victory, but note again — Durston did not give this argument at our debate. In a chance to confront a biologist with his claims, Durston tucked his tail between his legs and ran away.

[Read more…]

Speaking of media mangling…

The cover story of New Scientist asks, “Was Darwin wrong?”, as if this were surprising news (he was wrong about many things) or as if the discovery of new details would somehow demolish the whole structure of evolutionary theory. I’ll let Larry Moran take care of this one.

It’s a symptom of creationist influence that journals would think that hyping a story that “150 year old theory gets revised!” is newsworthy. And, of course, the creationists are eating it all up.

Sharon Begley, how could you?

Usually, Begley is reasonably good on science, but her latest piece is one big collection of misconceptions. It reflects a poor understanding of the science and of history, in that it confuses long-standing recognition of the importance of environmental factors in gene expression with a sudden reinstatement of Lamarckian inheritance, and it simply isn’t — she’s missed the point of the science and she has caricatured Lamarck.

Some water fleas sport a spiny helmet that deters predators; others, with identical DNA sequences, have bare heads. What differs between the two is not their genes but their mothers’ experiences. If mom had a run-in with predators, her offspring have helmets, an effect one wag called “bite the mother, fight the daughter.” If mom lived her life unthreatened, her offspring have no helmets. Same DNA, different traits. Somehow, the experience of the mother, not only her DNA sequences, has been transmitted to her offspring.

That gives strict Darwinians heart palpitations, for it reeks of the discredited theory of Jean-Baptiste Lamarck (1744-1829). The French naturalist argued that the reason giraffes have long necks, for instance, is that their parents stretched their (shorter) necks to reach the treetops. Offspring, Lamarck said, inherit traits their parents acquired. With the success of Darwin’s theory of random variation and natural selection, Lamarck was left on the ash heap of history. But new discoveries of what looks like the inheritance of traits acquired by parents–lab animals as well as people–are forcing biologists to reconsider Lamarckism.

She’s describing real and interesting phenomena, but it isn’t new and it isn’t revolutionary. These are results of plasticity and epigenetics, and we aren’t having heart palpitations over them (you’re also going to have a difficult time finding any “strict Darwinians” in the science community who are even surprised by this stuff). We load up pregnant women with folate and maternal vitamins and recommendations to eat well, and we tell them not to get drunk or smoke crack for a few months, because it is common sense and common knowledge that extra-genetic factors influence the health and development of the next generation. Genes don’t execute rigid, predetermined programs of development — they are responsive to the environment and can express radically different patterns in different contexts. The same genes build a caterpillar and a butterfly, the difference is in the hormonal environment that selects which genes will be active.

It’s the same story with the water fleas. Stressed and unstressed mothers switch on different genes in their offspring epigenetically, which lead to the expression of different morphology. It’s very cool stuff, but evolutionary biologists are about as shocked by this as they are by the idea that malnourished mothers have underweight babies. That environmental influences can have multi-generational effects, and that developmental programs can cue off of the history of the germ line, is not a new idea, especially among developmental biologists.

This is just wrong on evolution:

Water fleas pop out helmets immediately if mom lived in a world of predators; by Darwin’s lights, a population of helmeted fleas would take many generations to emerge through random variation and natural selection.

It misses the whole point. The population of water fleas have a genetic attribute that allows the formation of spines under one set of conditions, and suppresses them under others. This gene regulatory network did not pop into existence in a single generation! If it did, then Begley would have a big story, evolution would have experienced a serious blow, and we’d all be looking a little more carefully into this ‘intelligent design’ stuff. The pattern of gene regulation was the product of many generations of variation and selection; only the way it was expressed in a phenotype experienced a shift within a single generation.

It’s also not Lamarckism. It’s another of those short and simple-minded myths perpetuated by high-school textbooks that Lamarck and Darwin had competing explanations for the same phenomena. They did not. This story of giraffes stretching their necks is an example of the purported inheritance of acquired characteristics … and here’s some headline news, Darwin proposed exactly the same thing! Darwin did not have a solid theory of heredity, and he himself proposed a mechanism of pangenesis which permitted the inheritance of characters by use and disuse and by injury or malformation. The key difference is that Darwin proposed that these variations could lead to the formation of new species; Lamarck believed in the fixity of species, and thought that a species would merely express a constrained range of forms in differing environments.

Both were wrong. A concept called the Weismann barrier emerged in the late 19th century, which suggested that the only influences that can be transmitted across generations are those that affect the germ line, the cells that give rise to sperm and egg, and that modification of the somatic tissues alone would not propagate. This is correct, and it’s still true: nothing in these reports suggest anything but that when perturbed by environmental stressors, gametes can switch on different genetic programs.

I think epigenetics and plasticity are important and play a role in evolution, certainly, but these kinds of elaborations on how cells interact do not imply in any way that there is a revolution in evolution, or that evolutionary biology has had it all wrong, or that this is heresy in progress. It’s also annoying to see all the vague handwaving about discrediting a “Darwinian model” — what Darwinian model? These discoveries are about mechanisms of genetic inheritance, and Darwin didn’t have a valid mechanism in the first place. In that sense, the only real heresy that counted was Mendel’s.

Religion as the ultimate Big Mac

First, a warning: this is a link to a good science article, but it’s hosted on the Suicide Girls site, which contains many pictures of young ladies with attitude and tattoos in a state of deshabille. You may discover you are blocked at work. But do persevere! It will be worth it even if you have no interest in naked women!

Anyway, one of the broad points of dissension in the discussion of the evolution of religion can be split along one general question: was religion directly adaptive in the evolution of humans, or was it more of a side-effect of other useful cognitive and social properties? I’m on the side of the side-effect gang, and so this article on the evolution of religion jibes nicely with my position. And I really like this simple analogy:

The reason religion is so successful is that it taps into our primal-brains in much the same way that a Big Mac does — only more so. Religion gained its foothold by hijacking the need to give purpose at a time when humans had only their imagination — as opposed to the evidence and reason that we have today — to fathom their world. Spirits and demons were the explanation for illnesses that we now know are caused by bacterial diseases and genetic disorders. The whims of the gods were why earthquakes, volcanos, floods and droughts occurred. Our ancestors were driven to sacrifice everything from goats to one another to satisfy those gods.

Greasy, fatty, substanceless, and not at all good for you…but it tastes so good, and it’s cheap and readily available everywhere. That’s religion and fast food.

So read the whole thing, even if you do have to wait until you get home tonight.

Getting ready for Darwin Day

You should mark your calendars now…oh, wait, you’re all godless neodarwinist stooges, so you’ve already got Darwin Day colored in with circles and arrows and hearts. OK, so you should add an annotation if you live somewhere near Minneapolis, because the Bell Museum is sponsoring a special Darwin Day Cafe Scientifique, which will combine art and science to tell the story of evolution.

LIFE: A Journey Through Time
North American Premiere /Darwin Day Opening Event
Thursday, February 12, 2009, 7 to 9 p.m.
Bell Museum Auditorium
$10/ free to museum members and University students

Celebrate the 200th anniversary of Charles Darwin’s birthday with a special preview of LIFE: A Journey Through Time. The event will feature top University biologists using Lanting’s photographs as a springboard to deliver a rapid-fire presentations relating their research on evolution to the images. From the big bang to the human genome, hear the newest theories on how life evolved and enjoy the North American premiere of one the world’s most celebrated photography exhibits. Think speed-dating – Darwin-style!

This event is also the premier of an exhibit of a stunning collection of nature photography. You should go to that, too.

LIFE: A Journey Through Time
February 14 – April 12, 2009

The University of Minnesota Bell Museum of Natural History is proud to host the North American premier of this internationally acclaimed exhibit. LIFE: A Journey Through Time, interprets the evolution of life on Earth through photographer Frans Lanting. Lanting’s lyrical photos trace Earth’s history from the beginnings of primordial life to the ascent of mammals through otherworldly landscapes and breathtakingly intimate portraits of animals and plants engaged in million-year-old rituals. Many of the exhibit’s 62 photographs are matched with real animal, fossil, and plant specimens from the Bell Museum’s collection. Born in the Netherlands, Lanting serves on the National Council of the World Wildlife Fund and is a columnist for Outdoor Photographer and has received the BBC Wildlife Magazine’s Wildlife Photographer of the Year Award and the Sierra Club’s Ansel Adams Award for Conservation Photography.

One other special feature is that the speakers (I’m one of them) are going to present in Pecha Kucha style. This could be interesting, too.

Pecha Kucha (usually pronounced in three syllables like “peh-chach-ka”) was started in Tokyo, Japan in February 2003 by Astrid Klein and Mark Dytham as a designers’ show and tell event to attract more people to SuperDeluxe, their multi-media experimental event space they had set up in Roppongi.

The idea behind Pecha Kucha is to keep presentations concise, the interest level up and to have many presenters sharing their ideas within the course of one night. Therefore the 20×20 Pecha Kucha format was created: each presenter is allowed a slideshow of 20 images, each shown for 20 seconds. This results in a total presentation time of 6 minutes 40 seconds on a stage before the next presenter is up.

I’m planning to talk about the evolution of multicellularity…with 20 slides in 6 minutes and 40 seconds. We’ll see how that goes.